7sd9.1 | SWISS-MODEL Template Library

SMTL ID : 7sd9.1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x 8T6: N-[(2S)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4,4-dimethyl-1-oxopentan-2-yl]-1H-indole-2-carboxamide(Covalent)

8T6.1:	14 residues within 4Å: Chain A: H.41, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, H.172, R.188, Q.189 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:H.41, A:M.165 Hydrogen bonds: A:G.143, A:S.144, A:C.145, A:H.164, A:E.166, A:E.166, A:E.166, A:E.166 Water bridges: A:H.41, A:N.142
8T6.2:	14 residues within 4Å: Chain B: H.41, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, H.172, R.188, Q.189 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:H.41, B:M.165 Hydrogen bonds: B:G.143, B:S.144, B:C.145, B:H.164, B:E.166, B:E.166, B:E.166 Water bridges: B:H.41, B:N.142

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Geng, Z.Z. et al., A Systematic Survey of Reversibly Covalent Dipeptidyl Inhibitors of the SARS-CoV-2 Main Protease. J.Med.Chem. (2023)

Release Date

2022-11-09

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A