SMTL ID : 7sda.1

Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI49

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x 8UI: N-[(2S)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4,4-dimethyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide(Covalent)

8UI.1: 17 residues within 4Å: Chain A: H.41, M.49, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, P.168, H.172, D.187, R.188, Q.189 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:H.41, A:M.165, A:P.168 Hydrogen bonds: A:G.143, A:C.145, A:H.164, A:E.166, A:E.166, A:E.166, A:E.166 8UI.2: 17 residues within 4Å: Chain B: H.41, M.49, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, P.168, H.172, D.187, R.188, Q.189 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:H.41, B:M.165, B:P.168 Hydrogen bonds: B:G.143, B:C.145, B:H.164, B:E.166, B:E.166, B:E.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Geng, Z.Z. et al., A Systematic Survey of Reversibly Covalent Dipeptidyl Inhibitors of the SARS-CoV-2 Main Protease. J.Med.Chem. (2023)

Release Date

2022-11-09

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase

Related Entries With Identical Sequence