SMTL ID : 7seb.1

Crystal structure of human Fibrillarin in complex with compound 2 from single soak

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x 8XF: 6-(trifluoromethyl)pyrimidin-4-amine(Non-covalent)

8XF.1: 13 residues within 4Å: Chain A: G.88, A.90, V.111, E.112, F.113, E.136, D.137, A.138, R.139, V.158, Q.160, I.166 Ligands: FMT.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.158 Hydrogen bonds: A:E.112, A:F.113, A:A.138 pi-Stacking: A:F.113 Halogen bonds: A:D.137

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 8 residues within 4Å: Chain A: R.62, S.63, K.64, Y.86, A.90, T.93, T.94, V.95 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.93, A:T.94, A:T.94 Water bridges: A:T.93, A:T.94, A:V.95 FMT.3: 5 residues within 4Å: Chain A: P.133, V.134, I.135, E.136, L.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.135, A:E.136 FMT.4: 6 residues within 4Å: Chain A: G.88, A.90, E.112, D.157, V.158 Ligands: 8XF.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, Y. et al., Discovery of Cofactor Competitive Inhibitors against the Human Methyltransferase Fibrillarin. Pharmaceuticals (2021)

Release Date

2022-02-09

Peptides

rRNA 2'-O-methyltransferase fibrillarin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rRNA 2'-O-methyltransferase fibrillarin

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