SMTL ID : 7sed.1

Crystal structure of human Fibrillarin in complex with compound 2a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 8VD: N-(piperidin-4-yl)-6-(trifluoromethyl)pyrimidin-4-amine(Non-covalent)

8VD.1: 15 residues within 4Å: Chain A: G.88, A.89, A.90, V.111, E.112, F.113, E.136, D.137, A.138, R.139, D.157, V.158, A.159, Q.160, I.166 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.113, A:V.158 Hydrogen bonds: A:E.112, A:F.113, A:A.138 pi-Stacking: A:F.113 Halogen bonds: A:D.137

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 8 residues within 4Å: Chain A: R.62, S.63, K.64, Y.86, A.90, T.93, T.94, V.95 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.93, A:T.94, A:T.94 Water bridges: A:G.92, A:T.93, A:T.94, A:D.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, Y. et al., Discovery of Cofactor Competitive Inhibitors against the Human Methyltransferase Fibrillarin. Pharmaceuticals (2021)

Release Date

2022-02-09

Peptides

rRNA 2'-O-methyltransferase fibrillarin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rRNA 2'-O-methyltransferase fibrillarin

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