SMTL ID : 7sev.1

Crystal structure of E coli contaminant protein YadF co-purified with a plant protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.42, D.44, H.98, C.101, G.102 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.42, A:D.44, A:H.98, A:C.101 ZN.3: 5 residues within 4Å: Chain B: C.42, D.44, H.98, C.101, G.102 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.42, B:D.44, B:H.98, B:C.101 ZN.5: 5 residues within 4Å: Chain C: C.42, D.44, H.98, C.101, G.102 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.42, C:D.44, C:H.98, C:C.101 ZN.7: 5 residues within 4Å: Chain D: C.42, D.44, H.98, C.101, G.102 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.42, D:D.44, D:H.98, D:C.101

4 x K: POTASSIUM ION(Non-covalent)

K.2: 6 residues within 4Å: Chain A: C.42, S.45, R.46, R.64, H.98, Y.181 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:Y.181 K.4: 6 residues within 4Å: Chain B: C.42, S.45, R.46, R.64, H.98, Y.181 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:Y.181 K.6: 6 residues within 4Å: Chain C: C.42, S.45, R.46, R.64, H.98, Y.181 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:Y.181 K.8: 6 residues within 4Å: Chain D: C.42, S.45, R.46, R.64, H.98, Y.181 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:Y.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chai, L. et al., AlphaFold Protein Structure Database for Sequence-Independent Molecular Replacement. Crystals (2021)

Release Date

2021-11-03

Peptides

Carbonic anhydrase 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Carbonic anhydrase 2

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