SMTL ID : 7sew.1

M. tb EgtD in complex with HD6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

2 x PDO: 1,3-PROPANDIOL(Non-covalent)

PDO.1: 7 residues within 4Å: Chain A: F.142, E.143, E.144, H.145, L.146, T.147, A.178 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.142, A:L.146, A:T.147, A:T.147 PDO.2: 5 residues within 4Å: Chain A: G.14, H.15, W.37, D.40, V.223 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.14 Water bridges: A:R.226

1 x A1I: N-(cyclopent-3-ene-1-carbonyl)-L-histidine(Non-covalent)

A1I.3: 9 residues within 4Å: Chain A: Y.39, F.47, I.50, Y.56, T.163, N.166, Y.206, E.282, S.284 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.47, A:T.163 Hydrogen bonds: A:Y.39, A:Y.56, A:Y.56, A:N.166 Water bridges: A:A.205 Salt bridges: A:K.286

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: E.64, I.65, A.68, R.69, T.308, D.309, E.310 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.64, A:R.69, A:E.310, A:E.310, A:E.310 GOL.5: 2 residues within 4Å: Chain A: S.4, N.136 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sudasinghe, T.D. et al., Inhibitors of Mycobacterium tuberculosis EgtD target both substrate binding sites to limit hercynine production. Sci Rep (2021)

Release Date

2021-12-01

Peptides

Histidine N-alpha-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histidine N-alpha-methyltransferase

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