SMTL ID : 7sg5.1

Structure of PfCSP peptide 21 with antibody CIS43_Var2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.52, N.55 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.55 Salt bridges: A:K.52 SO4.3: 3 residues within 4Å: Chain B: K.109, E.111, R.148 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.111 Water bridges: B:K.109 Salt bridges: B:K.109, B:R.148 SO4.4: 2 residues within 4Å: Chain B: D.1, I.2 3 PLIP interactions: 3 interactions with chain B Water bridges: B:D.1, B:D.1, B:S.99 SO4.5: 1 residues within 4Å: Chain B: S.62 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.62, B:S.62 SO4.6: 3 residues within 4Å: Chain B: R.60, S.62, G.63 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.63 Water bridges: B:R.60 Salt bridges: B:R.60

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: F.174, P.175, V.177, S.185, L.186, S.187 Chain B: Q.166, S.168, S.182, S.183, T.184 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.166, B:S.168, B:T.184, A:F.174, A:L.186, A:S.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banach, B.B. et al., Highly protective antimalarial antibodies via precision library generation and yeast display screening. J.Exp.Med. (2022)

Release Date

2022-06-22

Peptides

CIS43_Var2 Fab Heavy chain: A
CIS43_Var2 Fab Light chain: B
PfCSP peptide 21: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

CIS43_Var2 Fab Heavy chain

CIS43_Var2 Fab Light chain

PfCSP peptide 21

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