- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 1 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
- 1 x EIJ: (2S)-1-{[(S)-hydroxy{[(1s,2R,3R,4R,5S,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}-3-(octadecanoyloxy)propan-2-yl (5E,8E,11E,14E)-icosa-5,8,11,14-tetraenoate(Non-covalent)
EIJ.2: 21 residues within 4Å:- Chain A: L.489, H.504, K.508, M.529, V.536, F.540, T.582, F.589, W.592
- Chain B: L.489, F.492, R.528, M.529, V.532, I.533, L.535, V.536, W.539, A.585
- Ligands: PEE.1, CLR.8
17 PLIP interactions:8 interactions with chain A, 9 interactions with chain B- Hydrophobic interactions: A:L.489, A:V.536, A:F.540, A:T.582, A:F.589, B:L.489, B:F.492, B:V.532, B:I.533, B:L.535, B:V.536, B:W.539, B:W.539
- Hydrogen bonds: A:H.504, B:R.528
- Salt bridges: A:H.504, A:K.508
- 22 x CLR: CHOLESTEROL(Non-covalent)(Covalent)
CLR.3: 6 residues within 4Å:- Chain A: R.528, A.531, F.538
- Ligands: PEE.1, CLR.4, CLR.14
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:R.528, A:A.531, A:F.538
CLR.4: 5 residues within 4Å:- Chain A: G.524, R.528
- Ligands: CLR.3, CLR.5, CLR.7
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:R.528
- Hydrogen bonds: A:R.528
CLR.5: 6 residues within 4Å:- Chain A: I.453, E.456, T.457, F.460, M.527
- Ligands: CLR.4
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.453, A:I.453, A:E.456, A:F.460, A:F.460
CLR.6: 5 residues within 4Å:- Chain A: T.545, C.549
- Chain B: R.577
- Ligands: CLR.7, CLR.19
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:T.545
CLR.7: 7 residues within 4Å:- Chain A: F.479, I.482, L.483, W.486, F.538
- Ligands: CLR.4, CLR.6
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.479, A:F.479, A:I.482, A:L.483, A:W.486, A:F.538
CLR.8: 6 residues within 4Å:- Chain A: L.588, W.592, Y.595
- Ligands: EIJ.2, CLR.10, CLR.20
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.588, A:Y.595
- Hydrogen bonds: A:W.592
CLR.9: 6 residues within 4Å:- Chain A: Y.580, V.584, A.625, T.629, F.632, V.633
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:Y.580, A:V.584, A:A.625, A:F.632, A:V.633
CLR.10: 8 residues within 4Å:- Chain A: R.577, Y.580, M.581, L.588
- Chain B: F.538, I.542
- Ligands: CLR.8, CLR.23
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.580, A:L.588, B:F.538
CLR.11: 5 residues within 4Å:- Chain A: R.601, R.611, V.615, H.618
- Ligands: CLR.12
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.615, A:H.618
CLR.12: 7 residues within 4Å:- Chain A: R.611, V.615, L.653, V.657, L.661
- Ligands: CLR.11, CLR.13
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.615, A:L.653, A:V.657, A:L.661
- Hydrogen bonds: A:R.611
CLR.13: 8 residues within 4Å:- Chain A: H.652, L.653, V.657, G.660, L.661, I.664, P.665
- Ligands: CLR.12
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.653, A:V.657, A:L.661, A:I.664, A:I.664, A:P.665
CLR.14: 6 residues within 4Å:- Chain B: L.588, L.591, W.592, Y.595
- Ligands: CLR.3, CLR.19
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:L.588, B:L.591, B:W.592, B:Y.595, B:Y.595
- Hydrogen bonds: B:Y.595
CLR.15: 7 residues within 4Å:- Chain B: R.601, V.615, H.618, N.619, I.622, I.623
- Ligands: CLR.16
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:V.615, B:H.618, B:I.622, B:I.622, B:I.623
- Hydrogen bonds: B:R.601
CLR.16: 6 residues within 4Å:- Chain B: R.611, V.615, N.619, L.653
- Ligands: CLR.15, CLR.17
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:V.615, B:N.619, B:L.653
CLR.17: 7 residues within 4Å:- Chain B: H.652, V.657, G.660, L.661, I.664, H.669
- Ligands: CLR.16
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:H.652, B:V.657, B:L.661, B:I.664, B:I.664
CLR.18: 6 residues within 4Å:- Chain B: Y.580, A.583, F.587, A.625, F.632, V.633
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:Y.580, B:Y.580, B:F.587, B:A.625, B:F.632, B:V.633
CLR.19: 6 residues within 4Å:- Chain A: W.539, I.542
- Chain B: R.577, M.581
- Ligands: CLR.6, CLR.14
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:W.539, A:I.542
- Hydrogen bonds: B:R.577
CLR.20: 5 residues within 4Å:- Chain B: R.528, A.531, F.538
- Ligands: CLR.8, CLR.21
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:A.531, B:F.538
CLR.21: 5 residues within 4Å:- Chain B: I.453, G.524, M.527, A.531
- Ligands: CLR.20
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:A.531
CLR.22: 5 residues within 4Å:- Chain B: I.453, E.456, T.457, F.460, L.464
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:E.456, B:L.464
CLR.23: 5 residues within 4Å:- Chain B: W.486, I.542, S.546, C.549
- Ligands: CLR.10
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:W.486, B:W.486, B:I.542
CLR.24: 5 residues within 4Å:- Chain B: F.479, I.482, L.483, W.486, T.545
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:F.479, B:F.479, B:I.482, B:L.483, B:W.486, B:W.486, B:W.486, B:T.545
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Patil, D.N. et al., Cryo-EM structure of human GPR158 receptor coupled to the RGS7-G beta 5 signaling complex. Science (2022)
- Release Date
- 2021-12-01
- Peptides
- G-protein coupled receptor 158: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 1 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
- 1 x EIJ: (2S)-1-{[(S)-hydroxy{[(1s,2R,3R,4R,5S,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}-3-(octadecanoyloxy)propan-2-yl (5E,8E,11E,14E)-icosa-5,8,11,14-tetraenoate(Non-covalent)
- 22 x CLR: CHOLESTEROL(Non-covalent)(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Patil, D.N. et al., Cryo-EM structure of human GPR158 receptor coupled to the RGS7-G beta 5 signaling complex. Science (2022)
- Release Date
- 2021-12-01
- Peptides
- G-protein coupled receptor 158: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.