SMTL ID : 7shm.1

Cryo-EM structure of ATP-bound human peroxisomal fatty acid transporter ABCD1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 22 residues within 4Å: Chain A: T.491, P.492, S.493, N.517, G.518, C.519, G.520, K.521, S.522, S.523, R.526, W.532, Q.552, Q.638, H.667 Chain B: R.599, D.611, V.612, S.614, G.615, G.616, E.617 19 PLIP interactions: 5 interactions with chain B, 14 interactions with chain A Hydrogen bonds: B:R.599, B:R.599, B:G.615, B:G.616, B:E.617, A:N.517, A:G.518, A:C.519, A:G.520, A:K.521, A:S.522, A:S.523, A:S.523, A:Q.552, A:Q.638, A:Q.638 Salt bridges: A:K.521, A:R.526, A:H.667 ATP.2: 21 residues within 4Å: Chain A: R.599, D.611, V.612, S.614, G.615, G.616, E.617 Chain B: T.491, S.493, N.517, G.518, C.519, G.520, K.521, S.522, S.523, R.526, W.532, Q.552, Q.638, H.667 19 PLIP interactions: 14 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:N.517, B:G.518, B:C.519, B:G.520, B:K.521, B:S.522, B:S.523, B:S.523, B:Q.552, B:Q.638, B:Q.638, A:R.599, A:R.599, A:G.615, A:G.616, A:E.617 Salt bridges: B:K.521, B:R.526, B:H.667

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, R. et al., Structural basis of acyl-CoA transport across the peroxisomal membrane by human ABCD1. Cell Res. (2022)

Release Date

2021-11-03

Peptides

ATP-binding cassette sub-family D member 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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ATP-binding cassette sub-family D member 1