SMTL ID : 7shn.1

Cryo-EM structure of oleoyl-CoA-bound human peroxisomal fatty acid transporter ABCD1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x 3VV: S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name)(Non-covalent)

3VV.1: 27 residues within 4Å: Chain A: S.234, L.237, L.238, A.240, A.241, S.243, S.252, M.343, K.344, W.347, S.348, G.351, M.354, V.355, P.358, I.359, L.385, E.388, R.389, A.392, A.396, R.397, L.400, T.401, A.404, I.407 Chain B: K.133 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.237, A:L.238, A:A.240, A:L.385, A:E.388, A:L.400, A:I.407 Hydrogen bonds: A:S.234, A:S.252, A:G.351, A:R.397 3VV.2: 29 residues within 4Å: Chain B: S.234, L.237, L.238, A.240, A.241, S.243, S.252, V.259, M.343, K.344, W.347, S.348, G.351, M.354, V.355, P.358, I.359, A.362, L.385, E.388, R.389, A.392, A.396, R.397, L.400, T.401, A.403, A.404, I.407 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:L.237, B:L.238, B:A.240, B:I.359, B:A.362, B:L.385, B:E.388, B:R.389, B:A.392, B:A.396, B:A.403, B:I.407 Hydrogen bonds: B:S.234, B:L.237, B:S.252 Salt bridges: B:R.397

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, R. et al., Structural basis of acyl-CoA transport across the peroxisomal membrane by human ABCD1. Cell Res. (2022)

Release Date

2021-11-03

Peptides

ATP-binding cassette sub-family D member 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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ATP-binding cassette sub-family D member 1