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SMTL ID : 7shq.1

Structure of a functional construct of eukaryotic elongation factor 2 kinase in complex with calmodulin.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

4 residues within 4Å:

Chain A: H.191, H.243, C.245, C.249

4 PLIP interactions:

4 interactions with chain A

Metal complexes: A:H.191, A:H.243, A:C.245, A:C.249

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2:	2 residues within 4Å: Chain A: D.215, Q.217 No protein-ligand interaction detected (PLIP)
MG.3:	1 residues within 4Å: Chain A: D.228 No protein-ligand interaction detected (PLIP)
MG.6:	4 residues within 4Å: Chain B: D.20, D.22, D.24, T.26 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.20, B:D.24, B:D.24, B:T.26, H₂O.6
MG.7:	3 residues within 4Å: Chain B: D.56, D.58, T.62 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.62, B:T.62, H₂O.5, H₂O.5, H₂O.6
MG.8:	1 residues within 4Å: Chain B: D.64 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.64, H₂O.5, H₂O.6

2 x CA: CALCIUM ION(Non-covalent)

CA.4:	5 residues within 4Å: Chain B: D.129, D.131, D.133, Q.135, E.140 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.129, B:D.133, B:Q.135, B:E.140, H₂O.5
CA.5:	5 residues within 4Å: Chain B: D.93, D.95, N.97, Y.99, E.104 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.93, B:Y.99, B:E.104, B:E.104, H₂O.3

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Piserchio, A. et al., Structural basis for the calmodulin-mediated activation of eukaryotic elongation factor 2 kinase. Sci Adv (2022)

Release Date

2022-04-06

Peptides

Eukaryotic elongation factor 2 kinase,Eukaryotic elongation factor 2 kinase: A
Calmodulin-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Eukaryotic elongation factor 2 kinase,Eukaryotic elongation factor 2 kinase

Calmodulin-1

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1a29.1 | 1cfc.1 | 1cfd.1 | 1cff.1 | 1ckk.1 | 1cll.1 | 1cm1.1 | 1cm1.2 | 1cm4.1 | 1ctr.1 | 1g4y.1 | 1iwq.1 | 1iwq.2 | 1k90.1 | 1k90.2 | 1k90.3 | 1k90.4 | 1l7z.1 | 1lin.1 | 1mux.1 | 1niw.1 | 1niw.2 | 1niw.3 | 1niw.4 | 1niw.5 | 1niw.6 | 1niw.7 | 1niw.8 | 1nwd.1 | 1qiv.1 more...less...

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