SMTL ID : 7sib.1

Myocilin OLF mutant K500R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: W.23, V.24, G.25, E.26, P.27, P.239, F.240, K.241, Y.270 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.25, A:K.241 Water bridges: A:V.24

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.153, N.201, A.202, I.250, D.251 Ligands: NA.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.153, A:A.202, A:I.250, A:D.251, H2O.6

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 7 residues within 4Å: Chain A: G.99, A.100, V.101, D.153, L.154, D.251 Ligands: CA.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scelsi, H.F. et al., Quantitative differentiation of benign and misfolded glaucoma-causing myocilin variants on the basis of protein thermal stability. Dis Model Mech (2023)

Release Date

2023-01-11

Peptides

Myocilin, C-terminal fragment: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myocilin, C-terminal fragment