SMTL ID : 7sj0.1

Antibody A7V3 bound to N-terminal domain of the spike

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.122, T.124, E.154 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.154, A:E.154 NAG.2: 2 residues within 4Å: Chain A: N.164, N.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.164, A:N.165 NAG.3: 1 residues within 4Å: Chain A: N.17 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.17 NAG.4: 5 residues within 4Å: Chain A: P.26, A.27, Y.28, N.61, T.63 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.63 NAG.5: 2 residues within 4Å: Chain A: H.146, N.149 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goike, J. et al., Antibody A7V3 bound to N-terminal domain of the spike. To Be Published

Release Date

2022-11-16

Peptides

Spike glycoprotein: A
A7V3 Fab heavy chain: B
A7V3 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
L

Spike glycoprotein

A7V3 Fab heavy chain

A7V3 Fab light chain

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