SMTL ID : 7sjm.1

anti-HtrA1 Fab15H6.v4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: N.161, Q.198, T.199 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.199, A:T.199 Water bridges: A:N.161, A:N.161, A:N.161, A:N.161 SO4.4: 2 residues within 4Å: Chain B: T.108, V.109 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.109 SO4.5: 5 residues within 4Å: Chain B: Q.36, L.46, V.57, P.58, F.61 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.36 Water bridges: B:K.38, B:K.38, B:K.38, B:K.38 Salt bridges: B:K.38 SO4.6: 3 residues within 4Å: Chain B: P.8, S.9, S.10 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.9, B:S.10

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 12 residues within 4Å: Chain A: L.147, F.172, P.173, V.175, S.183, L.184, S.185 Chain B: Q.159, S.161, S.175, S.176, T.177 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.183, A:S.185, A:S.185, B:S.161, B:S.175, B:T.177 GOL.3: 5 residues within 4Å: Chain A: K.149, D.150, Q.177, S.178, S.179 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.177, A:S.178, A:S.179, A:S.179 Water bridges: A:K.149, A:K.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gerhardy, S. et al., Allosteric inhibition of HTRA1 activity by a conformational lock mechanism to treat age-related macular degeneration. Nat Commun (2022)

Release Date

2022-09-07

Peptides

Heavy Chain: A
Light Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Heavy Chain

Light Chain

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