SMTL ID : 7sjq.1

Ex silico engineering of cystine-dense peptides yielding a potent bispecific T-cell engager

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: I.49, I.50, Q.51, E.57, D.58, L.59, V.61, Q.62 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.51, A:E.57 Water bridges: A:I.49, A:Q.51, A:D.58, A:D.58

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.20 3 PLIP interactions: 3 interactions with chain A Water bridges: A:G.18, A:N.20, A:N.20

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: R.71, K.74 5 PLIP interactions: 5 interactions with chain A Water bridges: A:E.57, A:L.72, A:K.74 Salt bridges: A:R.71, A:K.74

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain A: E.16, P.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.16, A:E.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crook, Z.R. et al., Ex silico engineering of cystine-dense peptides yielding a potent bispecific T cell engager. Sci Transl Med (2022)

Release Date

2022-06-08

Peptides

Programmed cell death 1 ligand 1: A
Cystine-dense peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Programmed cell death 1 ligand 1

Cystine-dense peptide