SMTL ID : 7ske.1

Myocilin OLF mutant R296H

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: V.24, G.25, E.26, P.27, P.239, F.240, K.241, Y.270 Ligands: GOL.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.241 GOL.2: 5 residues within 4Å: Chain A: N.193, I.194, R.195, S.198, F.224 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.193, A:R.195, A:S.198, A:S.198 GOL.3: 3 residues within 4Å: Chain A: W.23, P.239 Ligands: GOL.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.23 GOL.4: 4 residues within 4Å: Chain A: E.56, L.76, I.77, S.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.77, A:S.78, A:S.78

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 6 residues within 4Å: Chain A: D.153, N.201, A.202, I.250, D.251 Ligands: NA.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.153, A:A.202, A:I.250, A:D.251, H2O.3

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 7 residues within 4Å: Chain A: G.99, A.100, V.101, D.153, L.154, D.251 Ligands: CA.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scelsi, H.F. et al., Quantitative differentiation of benign and misfolded glaucoma-causing myocilin variants on the basis of protein thermal stability. Dis Model Mech (2023)

Release Date

2023-01-11

Peptides

Myocilin, C-terminal fragment: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myocilin, C-terminal fragment