SMTL ID : 7sli.1

Engineered sperm whale myoglobin-based carbene transferase MbBTIC-C2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 20 residues within 4Å: Chain A: L.33, T.40, K.43, I.44, R.46, F.65, T.68, G.69, A.72, L.73, I.76, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, A.108, F.139 22 PLIP interactions: 21 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:I.44, A:I.44, A:F.65, A:F.65, A:T.68, A:A.72, A:L.73, A:L.90, A:L.90, A:I.100, A:Y.104, A:A.108, A:F.139, A:F.139 Hydrogen bonds: A:S.93 Water bridges: A:H.98 Salt bridges: A:H.94, A:H.98 pi-Stacking: A:F.65, A:H.98 Metal complexes: A:H.94, H2O.6

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.35, T.52, E.53, A.54 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.53, A:A.54 Water bridges: A:K.35, A:K.35, A:E.53, A:E.53 Salt bridges: A:K.35 SO4.3: 3 residues within 4Å: Chain A: S.4, G.6, E.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.4 Water bridges: A:G.6, A:E.7 SO4.4: 3 residues within 4Å: Chain A: G.125, A.126, D.127 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.126, A:D.127 Water bridges: A:G.125, A:G.125, A:D.127, A:A.128 SO4.5: 2 residues within 4Å: Chain A: R.32, H.114 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.32 SO4.6: 2 residues within 4Å: Chain A: A.16, K.17 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.17 Salt bridges: A:K.17 SO4.7: 3 residues within 4Å: Chain A: Q.27, K.57, K.63 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.27 Water bridges: A:E.60, A:K.63, A:K.63 Salt bridges: A:K.63 SO4.8: 5 residues within 4Å: Chain A: L.50, A.58, S.59, E.60, D.61 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.59, A:E.60, A:D.61 Water bridges: A:D.61, A:D.61 SO4.9: 1 residues within 4Å: Chain A: K.64 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vargas, D.A. et al., Biocatalytic strategy for the construction of sp 3 -rich polycyclic compounds from directed evolution and computational modelling. Nat.Chem. (2024)

Release Date

2023-05-03

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin