SMTL ID : 7snb.1

The X-ray crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with AMP and ADP to 1.105 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.11 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: Y.54, V.148, L.195, A.196 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.54 GOL.2: 2 residues within 4Å: Chain A: N.79, L.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.80 Water bridges: A:N.78

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 24 residues within 4Å: Chain A: N.52, Y.54, P.55, D.60, T.61, N.64, G.101, N.102, S.103, G.104, I.106, V.144, K.146, P.147, V.148, T.151, I.152, L.153, D.205, S.206, G.207, G.208 Ligands: ADP.4, MG.5 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.52, A:T.61, A:N.64, A:N.102, A:S.103, A:S.103, A:K.146, A:V.148, A:T.151, A:I.152, A:D.205, A:D.205, A:S.206, A:G.207 Water bridges: A:D.60, A:N.102

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 25 residues within 4Å: Chain A: N.52, Y.54, P.55, D.58, D.60, T.61, N.64, G.101, N.102, S.103, I.106, V.144, K.146, P.147, V.148, T.151, I.152, L.153, D.205, S.206, G.207, G.208 Ligands: AMP.3, MG.5, MG.6 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:N.52, A:D.58, A:T.61, A:N.64, A:N.102, A:S.103, A:S.103, A:K.146, A:V.148, A:T.151, A:I.152, A:D.205, A:S.206, A:S.206, A:G.207 Water bridges: A:V.56, A:V.56, A:D.60, A:G.101, A:N.102, A:N.102, A:N.102, A:N.102

4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.5: 7 residues within 4Å: Chain A: N.52, D.58, D.60, T.61 Ligands: AMP.3, ADP.4, MG.6 5 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.58, A:D.60, H2O.3, H2O.3, AMP.3 MG.6: 5 residues within 4Å: Chain A: D.58, D.60, N.64 Ligands: ADP.4, MG.5 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.58, A:D.60, H2O.3, H2O.6, H2O.6 MG.7: 2 residues within 4Å: Chain A: N.190, N.193 No protein-ligand interaction detected (PLIP) MG.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuypers, M.G. et al., The X-ray crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with AMP and ADP to 1.105 Angstrom resolution. To Be Published

Release Date

2022-03-02

Peptides

Fatty Acid Kinase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty Acid Kinase A

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