SMTL ID : 7sne.4 (3 other biounits)

Pertussis toxin S1 subunit bound to BaAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

monomer

Ligands

1 x 9XR: [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(2R,3S,4R,5S)-5-(3-carbamoylanilino)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)(Non-covalent)

9XR.1: 22 residues within 4Å: Chain A: Y.10, R.11, Y.12, D.13, S.14, R.15, T.26, A.27, W.28, H.37, L.38, T.39, G.40, S.43, Q.44, S.54, T.55, S.56, Y.61, T.62, Y.65, E.131 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:Y.61, A:E.131 Hydrogen bonds: A:Y.12, A:Y.12, A:D.13, A:S.14, A:S.14, A:R.15, A:T.26, A:W.28, A:H.37, A:Q.44, A:Q.44, A:Y.61, A:Y.65, A:E.131 Water bridges: A:R.11, A:R.11, A:R.11, A:S.14, A:R.15, A:T.26, A:F.52 Salt bridges: A:R.11, A:R.11 pi-Stacking: A:W.28, A:W.28 pi-Cation interactions: A:R.15, A:R.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sakari, M. et al., Crystal structures of pertussis toxin with NAD + and analogs provide structural insights into the mechanism of its cytosolic ADP-ribosylation activity. J.Biol.Chem. (2022)

Release Date

2022-04-13

Peptides

Pertussis toxin subunit 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Pertussis toxin subunit 1

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