SMTL ID : 7soa.1

SARS-CoV-2 S NTD B.1.617.2 delta variant + S2L20 Local Refinement

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain C: N.122, A.123, T.124, V.127, W.152 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain C: F.59, N.61 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.61 NAG.3: 3 residues within 4Å: Chain C: N.278, E.279, N.280 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.278, C:E.279, C:N.280 NAG.4: 2 residues within 4Å: Chain C: Q.115, N.163 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.115, C:N.163 NAG.5: 4 residues within 4Å: Chain A: R.30 Chain C: G.230, I.231, N.232 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:N.232, A:R.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCallum, M. et al., Molecular basis of immune evasion by the Delta and Kappa SARS-CoV-2 variants. Science (2021)

Release Date

2021-11-17

Peptides

S2L20 Fab light chain: A
S2L20 Fab heavy chain: B
Spike glycoprotein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

S2L20 Fab light chain

S2L20 Fab heavy chain

Spike glycoprotein

Related Entries With Identical Sequence