SMTL ID : 7sq0.1

Get3 bound to ADP and the transmembrane domain of the tail-anchored protein Bos1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: G.24, V.25, G.26, K.27, T.28, T.29, N.57, N.276, F.277, P.317, L.318, R.319, E.322, V.323, Y.332 Chain B: E.249 Ligands: MG.3 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.24, A:V.25, A:G.26, A:K.27, A:T.28, A:T.29, A:T.29, A:T.29, A:N.276, A:P.317, A:R.319, B:E.249 ADP.4: 17 residues within 4Å: Chain A: E.249 Chain B: G.24, V.25, G.26, K.27, T.28, T.29, N.57, N.276, F.277, P.317, L.318, R.319, E.322, V.323, Y.332 Ligands: MG.5 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.24, B:V.25, B:G.26, B:K.27, B:T.28, B:T.28, B:T.29, B:T.29, B:T.29, B:N.276, B:P.317, B:R.319, A:E.249

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.287, C.290 Chain B: C.287, C.290 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.287, B:C.290, A:C.287, A:C.290

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: T.28, N.57 Ligands: ADP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.28 MG.5: 3 residues within 4Å: Chain B: T.28, N.57 Ligands: ADP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fry, M.Y. et al., Structurally derived universal mechanism for the catalytic cycle of the tail-anchored targeting factor Get3. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-07-20

Peptides

ATPase ASNA1 homolog: AB
TMD of the tail-anchored protein Bos1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

ATPase ASNA1 homolog

TMD of the tail-anchored protein Bos1