SMTL ID : 7srs.1

5-HT2B receptor bound to LSD in complex with beta-arrestin1 obtained by cryo-electron microscopy (cryoEM)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain C: N.166, N.169 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.166

1 x 7LD: (8alpha)-N,N-diethyl-6-methyl-9,10-didehydroergoline-8-carboxamide(Non-covalent)

7LD.2: 6 residues within 4Å: Chain C: W.96, L.97, D.100, S.104, F.246, F.247 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:W.96, C:L.97 Hydrogen bonds: C:G.186 Salt bridges: C:D.100 pi-Stacking: C:F.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, C. et al., Signaling snapshots of a serotonin receptor activated by the prototypical psychedelic LSD. Neuron (2022)

Release Date

2022-09-21

Peptides

Anti-5HT2BR Fab light chain: A
Anti-5HT2BR Fab heavy chain: B
5-hydroxytryptamine receptor 2B: C
Isoform 1B of Beta-arrestin-1: D
Fab30 heavy chain: E
Fab30 light chain: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
Q

C
R

D
C

E
H

F
L

Membrane

We predict this structure to be a membrane protein.
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Anti-5HT2BR Fab light chain

Anti-5HT2BR Fab heavy chain

5-hydroxytryptamine receptor 2B

Isoform 1B of Beta-arrestin-1

Fab30 heavy chain

Fab30 light chain

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