SMTL ID : 7ss8.1

Human P300 complexed with a proline-based inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.125, C.126, H.217, C.220 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.125, A:C.126, A:H.217, A:C.220 ZN.2: 4 residues within 4Å: Chain A: C.209, C.212, C.234, C.237 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.209, A:C.212, A:C.234, A:C.237

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: I.54, V.55, K.56, S.57, N.89, L.92 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.54, A:K.56, A:S.57, A:S.57, A:N.89 EDO.4: 4 residues within 4Å: Chain A: K.67, Q.72, Y.73, Q.78 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.67, A:K.67, A:Q.72, A:Q.72

1 x C0C: 1-[1-(4-chlorophenyl)cyclopentane-1-carbonyl]-N-{[3-(methylcarbamoyl)phenyl]methyl}-D-prolinamide(Non-covalent)

C0C.5: 17 residues within 4Å: Chain A: L.360, D.361, S.362, Y.376, P.402, D.406, D.407, Y.408, H.413, P.414, P.415, Q.417, I.419, P.420, R.424, L.425, W.428 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.360, A:Y.376, A:Y.376, A:P.402, A:Y.408, A:H.413, A:I.419, A:L.425, A:W.428, A:W.428, A:W.428 Hydrogen bonds: A:D.361, A:D.361, A:Q.417 Water bridges: A:H.413, A:Q.417, A:Q.417 pi-Stacking: A:H.413

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tian, X. et al., Discovery of Proline-Based p300/CBP Inhibitors Using DNA-Encoded Library Technology in Combination with High-Throughput Screening. J.Med.Chem. (2022)

Release Date

2022-11-09

Peptides

Histone acetyltransferase p300: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone acetyltransferase p300

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