SMTL ID : 7ssk.1

Human P300 complexed with a glycine-based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.125, C.126, H.217, C.220 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.125, A:C.126, A:H.217, A:C.220 ZN.2: 4 residues within 4Å: Chain A: C.209, C.212, C.234, C.237 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.209, A:C.212, A:C.234, A:C.237

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: I.54, V.55, K.56, S.57, N.89, L.92 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.54, A:K.56, A:S.57, A:S.57, A:N.89

1 x C3I: N-[2-(4-methoxyanilino)-2-oxoethyl]-N-methyl-1-phenylcyclopentane-1-carboxamide(Non-covalent)

C3I.4: 14 residues within 4Å: Chain A: L.360, D.361, S.362, Y.376, P.402, G.405, D.406, H.413, P.414, Q.417, I.419, P.420, L.425, W.428 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.360, A:Y.376, A:P.402, A:H.413, A:I.419, A:I.419, A:P.420, A:L.425, A:W.428, A:W.428, A:W.428 Hydrogen bonds: A:D.361, A:D.361, A:S.362 Water bridges: A:Q.417 pi-Stacking: A:H.413

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 4 residues within 4Å: Chain A: P.36, V.41, N.94, V.100 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.36, A:V.41 Hydrogen bonds: A:N.94 Water bridges: A:N.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tian, X. et al., Discovery of Proline-Based p300/CBP Inhibitors Using DNA-Encoded Library Technology in Combination with High-Throughput Screening. J.Med.Chem. (2022)

Release Date

2022-11-09

Peptides

Histone acetyltransferase p300: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone acetyltransferase p300

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