SMTL ID : 7st4.1

Calcium-saturated jGCaMP8.410.80

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.292, D.294, D.296, T.298, E.303 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.292, A:D.296, A:T.298, A:E.303, H2O.6 CA.2: 5 residues within 4Å: Chain A: D.328, D.330, D.332, T.334, E.339 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.328, A:D.330, A:D.332, A:E.339, H2O.4 CA.3: 5 residues within 4Å: Chain A: D.365, D.367, N.369, Y.371, E.376 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.365, A:D.367, A:Y.371, A:E.376, H2O.1 CA.4: 5 residues within 4Å: Chain A: D.401, D.403, D.405, Q.407, E.412 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.401, A:Q.407, A:E.412, A:E.412, H2O.2

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: Y.66, Q.67, Q.68, E.222, R.223, T.224, K.234 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.66, A:T.224, A:K.234 Water bridges: A:Q.67, A:K.234, A:T.235

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.6: 3 residues within 4Å: Chain A: S.289, D.292, G.295 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Fast and sensitive GCaMP calcium indicators for imaging neural populations. Nature (2023)

Release Date

2022-11-16

Peptides

jGCaMP8.410.80: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

jGCaMP8.410.80