SMTL ID : 7str.1

Crystal Structure of Human Fab S24-1063 in the Complex with the N-teminal Domain of Nucleocapsid Protein from SARS CoV-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain B: Y.33, I.98, Y.99, D.100, Y.105, H.106 Chain C: L.96 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.100, B:D.100 EDO.2: 6 residues within 4Å: Chain A: T.179 Chain B: L.150, V.178, S.186, L.187, S.188 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Water bridges: A:S.177, A:T.179, A:T.179, B:S.188, B:S.188 Hydrogen bonds: B:S.188 EDO.3: 5 residues within 4Å: Chain C: W.9, N.32, N.34, I.103, I.114 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.32, C:N.34 EDO.4: 5 residues within 4Å: Chain C: P.108, A.109, N.110, N.111, A.112 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Epitopes recognition of SARS-CoV-2 nucleocapsid RNA binding domain by human monoclonal antibodies. Iscience (2024)

Release Date

2022-08-10

Peptides

Fab S24-1063, Light chain: A
Fab S24-1063, Heavy chain: B
Nucleoprotein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
C

Fab S24-1063, Light chain

Fab S24-1063, Heavy chain

Nucleoprotein

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