SMTL ID : 7stx.1

Cryo-EM structure of human NatB in complex with CoA-Alpha-Synuclein

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x MET- ASP- VAL- PHE- MET: Alpha-synuclein(Non-covalent)

MET-ASP-VAL-PHE-MET.1: 15 residues within 4Å: Chain A: L.23, E.25, Y.27, H.73, V.74, T.75, A.76, L.77, S.78, F.111, Y.137, Y.138, A.140 Ligands: COA.2, ACE.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.27, A:T.75, A:T.75, A:Y.137 Salt bridges: A:H.73

1 x COA: COENZYME A(Covalent)

COA.2: 21 residues within 4Å: Chain A: L.23, T.24, L.77, S.78, V.79, R.84, R.85, L.86, G.87, L.88, A.89, A.90, F.111, N.116, V.118, M.122, Y.123, Q.125 Chain B: R.302 Ligands: MET-ASP-VAL-PHE-MET.1, ACE.3 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:R.84, A:V.118 Hydrogen bonds: A:V.79, A:R.84, A:R.84, A:R.85, A:L.86, A:G.87, A:L.88, A:A.89, A:A.90, A:N.116, A:Q.125, B:R.302 Salt bridges: A:R.85 pi-Cation interactions: A:R.85

1 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.3: 5 residues within 4Å: Chain A: V.74, F.111, Y.123 Ligands: MET-ASP-VAL-PHE-MET.1, COA.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, S. et al., Cryo-EM structure of human NatB in complex with CoA-Alpha-Synuclein. Not Published

Release Date

2021-12-22

Peptides

N-alpha-acetyltransferase 20: A
N-alpha-acetyltransferase 25, NatB auxiliary subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N-alpha-acetyltransferase 20

N-alpha-acetyltransferase 25, NatB auxiliary subunit

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