SMTL ID : 7sud.1

CryoEM structure of DNA-PK complex VIII

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: N.3927, D.3941 Ligands: ATP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.3941

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 15 residues within 4Å: Chain A: M.3729, S.3731, L.3751, K.3753, Y.3791, I.3803, E.3804, W.3805, L.3806, N.3926, N.3927, M.3929, I.3940, D.3941 Ligands: MG.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.3731, A:E.3804, A:L.3806 Salt bridges: A:K.3753, A:K.3753 pi-Stacking: A:W.3805

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Autophosphorylation transforms DNA-PK from protecting to processing DNA ends. Mol.Cell (2022)

Release Date

2022-01-12

Peptides

DNA-dependent protein kinase catalytic subunit: A
X-ray repair cross-complementing protein 5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

DNA-dependent protein kinase catalytic subunit

X-ray repair cross-complementing protein 5

Related Entries With Identical Sequence