SMTL ID : 7sus.1

Crystal structure of Apelin receptor in complex with small molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.253, C.256, C.286, C.289, V.291 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.253, A:C.256, A:C.286, A:C.289

1 x 8EH: (1R,2S)-N-[4-(2,6-dimethoxyphenyl)-5-(6-methylpyridin-2-yl)-1,2,4-triazol-3-yl]-1-(5-methylpyrimidin-2-yl)-1-oxidanyl-propane-2-sulfonamide(Non-covalent)

8EH.2: 17 residues within 4Å: Chain A: F.96, W.103, S.124, I.127, F.128, R.186, E.216, Y.323, K.327, Y.330, L.346, M.347, F.350, T.354, S.357, Y.358 Ligands: OLC.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.96, A:Y.330, A:Y.330, A:F.350, A:T.354, A:Y.358 Hydrogen bonds: A:R.186, A:E.216, A:K.327 pi-Stacking: A:W.103, A:W.103, A:Y.330, A:F.350 pi-Cation interactions: A:R.186

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.3: 11 residues within 4Å: Chain A: F.128, Y.132, L.178, V.182, M.201, L.219, G.220, S.222, S.223, K.327 Ligands: 8EH.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.178, A:L.219 Hydrogen bonds: A:K.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yue, Y. et al., Structural insight into apelin receptor-G protein stoichiometry. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-07-27

Peptides

Apelin receptor, with Rubredoxin insertion: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Apelin receptor, with Rubredoxin insertion