SMTL ID : 7swd.1

Structure of EBOV GP lacking the mucin-like domain with 1C11 scFv and 1C3 Fab bound

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-1-1-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 10 residues within 4Å: Chain C: L.38, E.124, V.148 Chain D: Q.5, N.60, T.63 Chain I: Y.101, Y.106, Y.195, S.202 3 PLIP interactions: 3 interactions with chain I Hydrogen bonds: I:Y.195, I:Y.195, I:S.202 NAG-NAG-BMA.2: 7 residues within 4Å: Chain E: N.41, E.124, V.148 Chain F: Q.5, N.60 Chain H: Y.101, Y.195 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 9 residues within 4Å: Chain A: E.124, V.148 Chain B: A.4, N.60, T.63 Chain G: Y.32, Y.101, Y.106, Y.195 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain A Hydrogen bonds: G:Y.32, A:E.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Milligan, J.C. et al., Asymmetric and non-stoichiometric glycoprotein recognition by two distinct antibodies results in broad protection against ebolaviruses. Cell (2022)

Release Date

2022-04-06

Peptides

Virion spike glycoprotein GP1: ACE
Virion spike glycoprotein GP2: BDF
1C11 scFv: GHI
1C3 heavy chain: J
1C3 light chain: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
G

H
H

I
I

J
J

K
K

Virion spike glycoprotein GP1

Virion spike glycoprotein GP2

1C11 scFv

1C3 heavy chain

1C3 light chain

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