SMTL ID : 7swk.1

NAD/NADP-dependent betaine aldehyde dehydrogenase from Klebsiella pneumoniae subsp. pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 9 residues within 4Å: Chain A: Q.65, E.149, P.150, L.151, Q.483 Chain B: H.440, Q.441, L.442, E.443 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.150, A:P.150 Water bridges: A:Q.65, A:R.147 MPD.4: 9 residues within 4Å: Chain A: H.440, Q.441, L.442, E.443 Chain B: Q.65, E.149, P.150, L.151, Q.483 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.149, B:P.150, B:P.150 Water bridges: B:Q.65

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: E.411, R.414, R.415 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.411 Salt bridges: A:R.414 ACT.5: 2 residues within 4Å: Chain B: E.411, R.414 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.411 Salt bridges: B:R.414

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.3: 7 residues within 4Å: Chain A: A.270, D.271, Y.406, A.407, D.408, E.409, R.434 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:D.271, A:Y.406, A:E.409 Hydrogen bonds: A:D.271, A:D.271, A:Y.406, A:E.409 MRD.6: 7 residues within 4Å: Chain B: A.270, D.271, Y.406, A.407, D.408, E.409, R.434 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:D.271 Hydrogen bonds: B:D.271, B:D.271, B:Y.406, B:E.409

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DeBouver, N.D. et al., NAD/NADP-dependent betaine aldehyde dehydrogenase from Klebsiella pneumoniae subsp. pneumoniae. to be published

Release Date

2021-12-01

Peptides

Betaine aldehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Betaine aldehyde dehydrogenase