SMTL ID : 7sww.1

SARS-CoV-2 Spike NTD in complex with neutralizing Fab SARS2-57 (local refinement)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.152 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain A: T.95, N.221, T.223 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.4, N.124 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain A: Y.15, N.17, N.48 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.17, A:N.48 NAG.5: 4 residues within 4Å: Chain A: N.112, V.113, V.114, V.158 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.158 Hydrogen bonds: A:N.112 NAG.6: 2 residues within 4Å: Chain A: H.133, N.136 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adams, L.J. et al., A protective antibody targeting the N-terminal domain of SARS-CoV-2 spike recognizes most emerging variants. To Be Published

Release Date

2022-11-23

Peptides

Spike protein S1: A
SARS2-57 Fv heavy chain: B
SARS2-57 Fv light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike protein S1

SARS2-57 Fv heavy chain

SARS2-57 Fv light chain

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