SMTL ID : 7syz.1

Hendra virus G protein head domain in complex with cross-neutralizing murine antibody hAH1.3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 6 residues within 4Å: Chain A: Q.478, W.479, R.480, N.481 Chain C: Q.27, H.98 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 7 residues within 4Å: Chain A: T.361, Y.363, K.415, N.417, S.419, L.420 Ligands: SO4.7 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- FUC- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC-FUC.3: 5 residues within 4Å: Chain A: Q.376, N.378, N.381 Chain B: D.62, K.65 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- FUC- FUC: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FUC-FUC.4: 7 residues within 4Å: Chain A: R.495, F.496, N.497, N.529 Chain B: Y.102 Chain C: N.35, K.55 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: B:Y.102, C:N.35, C:K.55 Hydrophobic interactions: A:N.497

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.5: 3 residues within 4Å: Chain A: V.300, N.306, S.309 No protein-ligand interaction detected (PLIP)

15 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: S.307, S.405, H.406, Y.407 Ligand excluded by PLIP SO4.7: 7 residues within 4Å: Chain A: Q.358, G.359, D.360, T.361, N.417, S.419 Ligands: NAG-NAG-BMA.2 Ligand excluded by PLIP SO4.8: 7 residues within 4Å: Chain A: H.386, C.387, K.388, C.499 Chain B: Y.101, Y.102, D.103 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain A: K.344, L.370, E.374, F.375, Q.376, R.410 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain A: V.182, G.183, L.448, G.449 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain A: K.357, Q.358, G.359 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain A: K.192, E.544, I.545 Ligand excluded by PLIP SO4.13: 7 residues within 4Å: Chain A: V.297, S.298, H.299, V.300, S.309, W.310, T.311 Ligand excluded by PLIP SO4.14: 7 residues within 4Å: Chain B: V.160, T.161, W.162, G.165, L.167, S.168, V.171 Ligand excluded by PLIP SO4.15: 7 residues within 4Å: Chain B: L.105, K.106, A.107 Chain C: Y.37, E.39, Y.54, K.55 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain B: K.38, K.46, F.64 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain B: Y.27, T.28, N.31, Y.32, R.98 Ligand excluded by PLIP SO4.18: 1 residues within 4Å: Chain B: N.88 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain B: A.122, K.123, T.125 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain C: E.159, R.160, Q.161, N.162 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Z. et al., Potent monoclonal antibody-mediated neutralization of a divergent Hendra virus variant. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-06-08

Peptides

Attachment glycoprotein: A
Antibody hAH1.3 Heavy Chain: B
Antibody hAH1.3 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Attachment glycoprotein

Antibody hAH1.3 Heavy Chain

Antibody hAH1.3 light chain

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