SMTL ID : 7szr.2 (1 other biounit)

NIK bound to inhibitor G02792917

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: T.59, E.60, K.61 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.59, A:E.60, A:K.61 SO4.2: 3 residues within 4Å: Chain A: G.24, Q.25, S.28 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.25

1 x DYQ: 1-(3-{[(1R,4R,5S)-4-hydroxy-2-methyl-3-oxo-2-azabicyclo[3.1.0]hexan-4-yl]ethynyl}phenyl)-1H-pyrazolo[3,4-b]pyridine-3-carboxamide(Non-covalent)

DYQ.3: 26 residues within 4Å: Chain A: R.84, G.85, S.86, E.89, V.90, A.103, K.105, E.116, L.117, C.120, V.129, P.130, L.131, I.143, F.144, M.145, E.146, L.147, L.148, G.151, S.152, Q.155, L.198, C.209, D.210, F.211 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.90, A:L.131, A:I.143, A:L.198, A:D.210 Hydrogen bonds: A:R.84, A:G.85, A:E.146, A:L.148, A:D.210, A:F.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crawford, J.J. et al., Filling a nick in NIK: Extending the half-life of a NIK inhibitor through structure-based drug design. Bioorg.Med.Chem.Lett. (2023)

Release Date

2023-06-07

Peptides

Mitogen-activated protein kinase kinase kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Mitogen-activated protein kinase kinase kinase 14

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