SMTL ID : 7szs.1

Crystal Structure of Probable GTP-binding protein EngB bound to GDP from Klebsiella pneumoniae subsp. pneumoniae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 14 residues within 4Å: Chain A: R.43, S.44, N.45, A.46, G.47, K.48, S.49, S.50, K.155, D.157, K.158, S.188, S.189, L.190 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:R.43, A:N.45, A:A.46, A:G.47, A:K.48, A:S.49, A:S.49, A:S.50, A:S.50, A:K.155, A:K.158, A:S.189, A:L.190 Water bridges: A:R.43, A:N.45, A:N.45, A:K.48, A:K.155, A:K.158, A:K.158, A:K.158 Salt bridges: A:D.157 GDP.3: 16 residues within 4Å: Chain B: R.43, S.44, N.45, A.46, G.47, K.48, S.49, S.50, T.64, K.155, D.157, K.158, S.188, S.189, L.190 Ligands: PGR.5 20 PLIP interactions: 19 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.43, B:N.45, B:A.46, B:G.47, B:K.48, B:S.49, B:S.49, B:S.50, B:S.50, B:T.64, B:K.155, B:S.189, B:L.190, A:H.6 Water bridges: B:N.45, B:N.45, B:N.45, B:K.48, B:K.155 Salt bridges: B:D.157

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: Q.16, T.54, N.57, R.199 Chain B: N.12, W.13, N.14 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.16, A:N.57, A:R.199, B:N.12 Water bridges: A:L.55, B:N.14

1 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.4: 6 residues within 4Å: Chain A: N.12, W.13, N.14 Chain B: T.54, N.57, K.192 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:T.54, B:K.192 Hydrogen bonds: B:N.57, A:N.12 Water bridges: B:Q.58, B:R.199

1 x PGR: R-1,2-PROPANEDIOL(Non-covalent)

PGR.5: 5 residues within 4Å: Chain B: S.50, S.189, L.190, K.192 Ligands: GDP.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.50, B:S.50, B:K.192, B:K.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DeBouver, N.D. et al., Crystal Structure of Probable GTP-binding protein EngB bound to GDP from Klebsiella pneumoniae subsp. pneumoniae. to be published

Release Date

2021-12-15

Peptides

Probable GTP-binding protein EngB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable GTP-binding protein EngB