SMTL ID : 7szv.1

Crystal Structure of Acyl-CoA dehydrogenase from Mycobacterium marinum in complex with FDA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)

FDA.1: 25 residues within 4Å: Chain A: L.98, F.128, L.130, T.131, F.161, I.162, T.163, K.209, T.217, I.366, I.369, T.373, E.375 Chain B: R.276, S.278, F.279, I.283, Y.286, I.289, Q.344, V.345, G.347, G.348, M.352 Chain C: Q.287 20 PLIP interactions: 13 interactions with chain A, 6 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: A:F.161, A:K.209, A:T.217, A:I.366 Hydrogen bonds: A:F.128, A:L.130, A:T.131, A:T.131, A:T.131, A:A.135, A:T.163, A:T.163, A:T.373, B:S.278, B:S.278, B:Q.344, B:G.348, C:Q.287 Salt bridges: B:R.276, B:R.276 FDA.2: 27 residues within 4Å: Chain A: R.276, S.278, I.283, Y.286, A.288, I.289, Q.344, V.345, G.347, G.348, F.351, M.352 Chain B: L.98, F.128, L.130, T.131, F.161, I.162, T.163, K.209, W.212, I.366, I.369, T.373, E.375, M.379 Chain D: Q.287 27 PLIP interactions: 16 interactions with chain B, 10 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: B:F.161, B:K.209, B:W.212, B:I.366, A:F.351 Hydrogen bonds: B:F.128, B:L.130, B:T.131, B:T.131, B:T.131, B:T.163, B:T.163, B:T.163, B:T.373, B:T.373, B:E.375, A:S.278, A:S.278, A:Q.344, A:Q.344, A:G.348, D:Q.287 Water bridges: B:E.371, A:R.276, A:R.276 Salt bridges: A:R.276, A:R.276 FDA.3: 25 residues within 4Å: Chain A: Q.287 Chain C: L.98, F.128, L.130, T.131, F.161, I.162, T.163, K.209, T.217, I.366, I.369, T.373, E.375 Chain D: R.276, S.278, F.279, I.283, Y.286, I.289, Q.344, V.345, G.347, G.348, M.352 20 PLIP interactions: 6 interactions with chain D, 13 interactions with chain C, 1 interactions with chain A Hydrogen bonds: D:S.278, D:S.278, D:Q.344, D:G.348, C:F.128, C:L.130, C:T.131, C:T.131, C:T.131, C:A.135, C:T.163, C:T.163, C:T.373, A:Q.287 Salt bridges: D:R.276, D:R.276 Hydrophobic interactions: C:F.161, C:K.209, C:T.217, C:I.366 FDA.4: 27 residues within 4Å: Chain B: Q.287 Chain C: R.276, S.278, I.283, Y.286, A.288, I.289, Q.344, V.345, G.347, G.348, F.351, M.352 Chain D: L.98, F.128, L.130, T.131, F.161, I.162, T.163, K.209, W.212, I.366, I.369, T.373, E.375, M.379 27 PLIP interactions: 16 interactions with chain D, 10 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: D:F.161, D:K.209, D:W.212, D:I.366, C:F.351 Hydrogen bonds: D:F.128, D:L.130, D:T.131, D:T.131, D:T.131, D:T.163, D:T.163, D:T.163, D:T.373, D:T.373, D:E.375, C:S.278, C:S.278, C:Q.344, C:Q.344, C:G.348, B:Q.287 Water bridges: D:E.371, C:R.276, C:R.276 Salt bridges: C:R.276, C:R.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DeBouver, N.D. et al., Crystal Structure of Acyl-CoA dehydrogenase from Mycobacterium marinum in complex with FDA. to be published

Release Date

2021-12-22

Peptides

Acyl-CoA dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Acyl-CoA dehydrogenase