SMTL ID : 7t02.1

Cryo-EM structure of DNMT5 pseudo-ternary complex solved by incubation with hemimethylated DNA and SAM

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.788, C.790, C.811, C.814 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.788, A:C.790, A:C.811, A:C.814 ZN.2: 4 residues within 4Å: Chain A: C.1171, C.1242, C.1245, H.1319 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1171, A:C.1242, A:C.1245, A:H.1319 ZN.3: 5 residues within 4Å: Chain A: C.803, E.805, C.806, H.820, C.1036 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.803, A:E.805, A:C.806, A:H.820, A:C.1036 ZN.4: 4 residues within 4Å: Chain A: C.2052, H.2054, C.2075, C.2078 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.2052, A:H.2054, A:C.2075, A:C.2078 ZN.5: 5 residues within 4Å: Chain A: C.2070, H.2072, C.2088, C.2094, A.2096 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.2070, A:H.2072, A:C.2088, A:C.2094

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Structural insights into DNMT5-mediated ATP-dependent high-fidelity epigenome maintenance. Mol.Cell (2022)

Release Date

2022-02-23

Peptides

DNA repair protein Rad8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA repair protein Rad8

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