SMTL ID : 7t1a.1

Rev1 Ternary Complex with dATP and Ca2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: A.11 Chain C: D.253, L.255, P.256, V.258 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.253, C:L.255, C:V.258 CA.4: 5 residues within 4Å: Chain C: D.67, F.68, D.172 Ligands: DTP.2, CA.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.67, C:D.67, C:F.68, C:D.172 CA.5: 7 residues within 4Å: Chain A: G.12 Chain C: D.67, S.170, D.172, E.173 Ligands: DTP.2, CA.4 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.67, C:D.172, C:E.173

1 x DTP: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE(Non-covalent)

DTP.2: 19 residues within 4Å: Chain A: G.12 Chain C: R.29, L.33, D.67, F.68, D.69, C.70, F.71, F.72, A.106, S.107, Y.110, R.113, N.119, D.172, K.230 Ligands: GOL.3, CA.4, CA.5 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:F.72 Hydrogen bonds: C:R.29, C:D.67, C:D.67, C:C.70, C:F.71, C:F.72, C:S.107, C:Y.110, C:Y.110, C:N.119 Salt bridges: C:R.113, C:R.113, C:K.230

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain B: G.4 Chain C: R.29, L.30, D.104 Ligands: DTP.2 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.29 Water bridges: C:D.104, C:D.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weaver, T.M. et al., Mechanism of nucleotide discrimination by the translesion synthesis polymerase Rev1. Nat Commun (2022)

Release Date

2022-05-25

Peptides

DNA repair protein REV1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA repair protein REV1

Related Entries With Identical Sequence