SMTL ID : 7t29.1

Crystal Structure of Adenylosuccinate lyase (ASL) from Pseudomonas aeruginosa complexed with AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 17 residues within 4Å: Chain A: N.98, H.99, D.100, S.131, E.132, N.135, Q.256, R.344, L.346, S.349, T.350, R.353 Chain C: R.23, Y.24, I.314, N.318 Chain D: H.179 19 PLIP interactions: 4 interactions with chain C, 14 interactions with chain A, 1 interactions with chain D Hydrogen bonds: C:R.23, C:Y.24, C:N.318, A:E.94, A:E.94, A:N.98, A:D.100, A:E.132, A:Q.256, A:R.344, A:S.349 Salt bridges: C:R.23, A:R.353 Water bridges: A:S.131, A:S.131, A:N.135, A:T.350, D:T.178 pi-Stacking: A:H.99 AMP.4: 17 residues within 4Å: Chain B: N.98, H.99, D.100, S.131, E.132, N.135, Q.256, R.344, L.346, S.349, T.350, R.353 Chain C: H.179 Chain D: R.23, Y.24, I.314, N.318 19 PLIP interactions: 14 interactions with chain B, 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: B:E.94, B:E.94, B:N.98, B:D.100, B:E.132, B:Q.256, B:R.344, B:S.349, D:R.23, D:Y.24, D:N.318 Water bridges: B:S.131, B:S.131, B:N.135, B:T.350, C:T.178 Salt bridges: B:R.353, D:R.23 pi-Stacking: B:H.99 AMP.7: 17 residues within 4Å: Chain A: R.23, Y.24, I.314, N.318 Chain B: H.179 Chain C: N.98, H.99, D.100, S.131, E.132, N.135, Q.256, R.344, L.346, S.349, T.350, R.353 18 PLIP interactions: 13 interactions with chain C, 5 interactions with chain A Hydrogen bonds: C:E.94, C:N.98, C:D.100, C:Q.256, C:R.344, C:S.349, A:R.23, A:Y.24, A:Y.24, A:N.318 Water bridges: C:S.131, C:S.131, C:N.135, C:Q.256, C:T.350 Salt bridges: C:R.353, A:R.23 pi-Stacking: C:H.99 AMP.10: 17 residues within 4Å: Chain A: H.179 Chain B: R.23, Y.24, I.314, N.318 Chain D: N.98, H.99, D.100, S.131, E.132, N.135, Q.256, R.344, L.346, S.349, T.350, R.353 18 PLIP interactions: 5 interactions with chain B, 13 interactions with chain D Hydrogen bonds: B:R.23, B:Y.24, B:Y.24, B:N.318, D:E.94, D:N.98, D:D.100, D:Q.256, D:R.344, D:S.349 Salt bridges: B:R.23, D:R.353 Water bridges: D:S.131, D:S.131, D:N.135, D:Q.256, D:T.350 pi-Stacking: D:H.99

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: R.282, D.283 Chain D: R.341, W.342 Ligands: EDO.5 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:W.342, A:D.283 EDO.3: 3 residues within 4Å: Chain A: H.8, M.9, Q.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.10, A:Q.10 EDO.5: 5 residues within 4Å: Chain B: R.282, D.283 Chain C: R.341, W.342 Ligands: EDO.2 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:W.342, B:D.283 EDO.6: 3 residues within 4Å: Chain B: H.8, M.9, Q.10 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.10, B:Q.10 EDO.8: 5 residues within 4Å: Chain B: R.341, W.342 Chain C: R.282, D.283 Ligands: EDO.11 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:W.342, C:D.283, C:D.283 EDO.9: 3 residues within 4Å: Chain C: H.8, M.9, Q.10 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.10, C:Q.10 EDO.11: 5 residues within 4Å: Chain A: R.341, W.342 Chain D: R.282, D.283 Ligands: EDO.8 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:W.342, D:D.283, D:D.283 EDO.12: 3 residues within 4Å: Chain D: H.8, M.9, Q.10 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Q.10, D:Q.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dranow, D.M. et al., Crystal Structure of Adenylosuccinate lyase (ASL) from Pseudomonas aeruginosa complexed with AMP. to be published

Release Date

2021-12-15

Peptides

Adenylosuccinate lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Adenylosuccinate lyase

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