SMTL ID : 7t3d.1

CryoEM map of anchor 222-1C06 Fab and lateral patch 2B05 Fab binding H1 HA

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: N.68, P.69, E.70, D.90, N.91, C.94, P.141, R.225 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 8 residues within 4Å: Chain G: N.68, P.69, E.70, D.90, N.91, C.94, P.141, R.225 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 8 residues within 4Å: Chain M: N.68, P.69, E.70, D.90, N.91, C.94, P.141, R.225 No protein-ligand interaction detected (PLIP)

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.15, S.16 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain A: K.26, N.27 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain A: D.278, C.279, N.280 Ligand excluded by PLIP NAG.7: 2 residues within 4Å: Chain A: N.280, N.291 Ligand excluded by PLIP NAG.8: 4 residues within 4Å: Chain B: E.150, S.151, N.154, T.156 Ligand excluded by PLIP NAG.9: 2 residues within 4Å: Chain G: N.15, S.16 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain G: K.26, N.27 Ligand excluded by PLIP NAG.11: 3 residues within 4Å: Chain G: D.278, C.279, N.280 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain G: N.280, N.291 Ligand excluded by PLIP NAG.13: 4 residues within 4Å: Chain H: E.150, S.151, N.154, T.156 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain M: N.15, S.16 Ligand excluded by PLIP NAG.15: 2 residues within 4Å: Chain M: K.26, N.27 Ligand excluded by PLIP NAG.16: 3 residues within 4Å: Chain M: D.278, C.279, N.280 Ligand excluded by PLIP NAG.17: 2 residues within 4Å: Chain M: N.280, N.291 Ligand excluded by PLIP NAG.18: 4 residues within 4Å: Chain N: E.150, S.151, N.154, T.156 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guthmiller, J.J. et al., Broadly neutralizing antibodies target a haemagglutinin anchor epitope. Nature (2022)

Release Date

2022-01-12

Peptides

Hemagglutinin HA1 chain: AGM
Hemagglutinin HA2 chain: BHN
2B05 mAb light chain: CIO
2B05 mAb heavy chain: DJP
222-1C06 mAb heavy chain: EKQ
222-1C06 mAb light chain: FLR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

G
E

M
F

B
B

H
G

N
I

C
D

I
M

O
N

D
C

J
J

P
K

E
H

K
O

Q
P

F
L

L
Q

R
R

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

2B05 mAb light chain

2B05 mAb heavy chain

222-1C06 mAb heavy chain

222-1C06 mAb light chain

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