SMTL ID : 7t3f.1

Development of BRD4 inhibitors as arsenicals antidotes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

monomer

Ligands

1 x EM0: 4-fluoro-3-methyl-N-(3-methyl-2-oxo-1,2,3,4-tetrahydroquinazolin-6-yl)benzene-1-sulfonamide(Non-covalent)

EM0.1: 13 residues within 4Å: Chain A: W.41, P.42, F.43, V.47, L.52, L.54, C.96, Y.99, N.100, D.105, I.106, M.109 Ligands: GOL.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.41, A:L.52, A:L.54, A:L.54, A:D.105 Hydrogen bonds: A:N.100, A:N.100 Water bridges: A:L.52 Halogen bonds: A:D.105

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: I.60, I.61, K.62, T.63, N.95, I.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.62, A:T.63, A:T.63, A:N.95 GOL.3: 4 residues within 4Å: Chain A: Q.22, Q.83, I.86, L.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.22, A:Q.22 GOL.4: 3 residues within 4Å: Chain A: D.104, D.105 Ligands: EM0.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.105 Water bridges: A:D.104, A:D.104, A:D.104, A:D.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yatchang, M.F. et al., Development of BRD4 inhibitors as anti-inflammatory agents and antidotes for arsenicals. Bioorg.Med.Chem.Lett. (2022)

Release Date

2022-08-31

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4