SMTL ID : 7t4q.1

CryoEM structure of the HCMV Pentamer gH/gL/UL128/UL130/UL131A in complex with neutralizing fabs 2C12, 7I13 and 13H11

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.55 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.55 NAG.2: 3 residues within 4Å: Chain A: Y.61, N.62 Chain B: L.55 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.61 Hydrogen bonds: A:N.62 NAG.3: 2 residues within 4Å: Chain A: H.190, N.192 No protein-ligand interaction detected (PLIP) NAG.4: 1 residues within 4Å: Chain B: N.74 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.74 NAG.5: 2 residues within 4Å: Chain D: N.201 Chain E: H.116 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain C: Y.130 Chain E: N.81, E.84 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain E Hydrogen bonds: C:Y.130, E:N.81, E:E.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kschonsak, M. et al., Structural basis for HCMV Pentamer receptor recognition and antibody neutralization. Sci Adv (2022)

Release Date

2022-03-23

Peptides

Envelope glycoprotein H: A
Envelope glycoprotein L: B
Envelope protein UL128: C
Envelope glycoprotein UL130: D
Envelope protein UL131A: E
Fab 2C12 heavy chain: F
Fab 2C12 light chain: G
Fab 7I13 light chain: H
Fab 7I13 heavy chain: I
Fab 13H11 heavy chain: J
Fab 13H11 light chain: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

Envelope glycoprotein H

Envelope glycoprotein L

Envelope protein UL128

Envelope glycoprotein UL130

Envelope protein UL131A

Fab 2C12 heavy chain

Fab 2C12 light chain

Fab 7I13 light chain

Fab 7I13 heavy chain

Fab 13H11 heavy chain

Fab 13H11 light chain

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