SMTL ID : 7t6d.1

CryoEM structure of the YejM/LapB complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

1 x LPP: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE(Non-covalent)

LPP.1: 16 residues within 4Å: Chain A: M.19, R.22, S.23, Q.26 Chain C: V.16, S.17, H.20, W.21, I.27, S.62, F.66, R.167, R.171, A.174, A.175, F.178 9 PLIP interactions: 8 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:I.27, C:F.66, C:F.66, C:A.175, C:F.178, C:F.178 Salt bridges: C:R.167, C:R.171, A:R.22

1 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)

PGV.2: 13 residues within 4Å: Chain A: L.4 Chain C: N.26, F.63, L.64, V.65, T.68, Y.69, L.73, G.97, L.101, L.115, P.117, L.208 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:F.63, C:L.64, C:T.68, C:Y.69, C:L.73, C:L.101, C:L.101, C:L.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shu, S. et al., Regulatory mechanisms of lipopolysaccharide synthesis in Escherichia coli. Nat Commun (2022)

Release Date

2022-08-17

Peptides

Lipopolysaccharide assembly protein B: AB
Inner membrane protein YejM: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Lipopolysaccharide assembly protein B

Inner membrane protein YejM

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