SMTL ID : 7t6q.1

Cryo-EM structure of TRPV5 T709D with PI(4,5)P2 in nanodiscs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate(Covalent)

PIO.1: 11 residues within 4Å: Chain A: R.302, F.416, G.417, P.424, V.427, K.484, F.487, G.488, M.491, R.492, R.584 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.427, A:F.487, A:F.487 Hydrogen bonds: A:R.492, A:R.584 Salt bridges: A:R.302, A:R.584 PIO.2: 11 residues within 4Å: Chain B: R.302, F.416, G.417, P.424, V.427, K.484, F.487, G.488, M.491, R.492, R.584 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:V.427, B:F.487, B:F.487 Hydrogen bonds: B:R.492, B:R.584 Salt bridges: B:R.302, B:K.484, B:R.584 PIO.3: 11 residues within 4Å: Chain C: R.302, F.416, G.417, P.424, V.427, K.484, F.487, G.488, M.491, R.492, R.584 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:V.427, C:F.487, C:F.487 Hydrogen bonds: C:R.492, C:R.584 Salt bridges: C:R.302, C:K.484, C:R.584 PIO.4: 10 residues within 4Å: Chain D: R.302, F.416, G.417, P.424, V.427, K.484, F.487, G.488, R.492, R.584 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:V.427, D:F.487, D:F.487 Hydrogen bonds: D:R.492, D:R.584 Salt bridges: D:R.302, D:K.484, D:R.584

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fluck, E.C. et al., Structural basis of TRPV5 regulation by physiological and pathophysiological modulators. Cell Rep (2022)

Release Date

2022-05-04

Peptides

Transient receptor potential cation channel subfamily V member 5: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 5

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