SMTL ID : 7t79.1 (1 other biounit)

CRYSTAL STRUCTURE OF GLUCOKINASE (HEXOKINASE 4) COMPLEXED WITH LIGAND AKA DIETHYL {[3-(3-{[5-(AZETIDINE-1-CARBON YL)PYRAZIN-2-YL]OXY}-5-(PROPAN-2-YLOXY)BENZAMIDO)-1H- PYRAZOL-1-YL]METHYL}PHOSPHONATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x G1S: diethyl {[3-(3-{[5-(azetidine-1-carbonyl)pyrazin-2-yl]oxy}-5-[(propan-2-yl)oxy]benzamido)-1H-pyrazol-1-yl]methyl}phosphonate(Non-covalent)

G1S.1: 24 residues within 4Å: Chain A: Y.62, V.63, R.64, S.65, T.66, P.67, G.69, S.70, V.92, W.100, V.102, I.160, M.211, I.212, Y.215, Y.216, C.221, E.222, M.236, L.452, V.453, V.456, A.457, K.460 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.63, A:T.66, A:V.92, A:W.100, A:V.102, A:I.160, A:I.212, A:Y.215, A:Y.216, A:V.456 Hydrogen bonds: A:R.64, A:R.64, A:T.66, A:G.69 pi-Stacking: A:Y.215

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.2: 15 residues within 4Å: Chain A: S.152, F.153, P.154, T.169, K.170, N.205, D.206, T.207, I.226, G.230, C.231, N.232, E.257, Q.288, E.291 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:T.169, A:K.170, A:N.205, A:N.205, A:C.231, A:N.232, A:E.257, A:Q.288 Water bridges: A:K.170, A:G.230, A:C.231, A:E.257 Salt bridges: A:K.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, Y. et al., Discovery of a Partial Glucokinase Activator Clinical Candidate: Diethyl ((3-(3-((5-(Azetidine-1-carbonyl)pyrazin-2-yl)oxy)-5-isopropoxybenzamido)-1 H -pyrazol-1-yl)methyl)phosphonate (BMS-820132). J.Med.Chem. (2022)

Release Date

2022-03-02

Peptides

Isoform 2 of Hexokinase-4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 2 of Hexokinase-4

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