SMTL ID : 7t7z.1

The crystal structure of family 8 carbohydrate-binding module from Dictyostelium discoideum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: N.66, N.67, S.118, I.120, D.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.67 Water bridges: A:N.66, A:I.120, A:I.120

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: V.34 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.34, A:V.34

1 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.3: 4 residues within 4Å: Chain A: D.20, H.26, S.27, L.28 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.26, A:S.27, A:L.28 Water bridges: A:H.26 Salt bridges: A:H.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liberato, M.V. et al., Unique properties of a Dictyostelium discoideum carbohydrate-binding module expand our understanding of CBM-ligand interactions. J.Biol.Chem. (2022)

Release Date

2022-04-20

Peptides

Endoglucanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endoglucanase

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