SMTL ID : 7t9h.1

HIV Integrase in complex with Compound-15

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.18, D.70 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.18, A:D.70, H2O.1 MG.3: 2 residues within 4Å: Chain B: D.18, D.70 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.18, B:D.70, H2O.1

2 x GE7: (2S)-tert-butoxy[2-methyl-4-(4-methylphenyl)quinolin-3-yl]acetic acid(Non-covalent)

GE7.2: 11 residues within 4Å: Chain A: A.123, E.124, H.125, T.128, M.132 Chain B: Q.49, A.52, T.79, A.82, A.83, W.86 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:T.128, B:Q.49, B:A.52, B:T.79, B:A.82, B:W.86 Hydrogen bonds: A:E.124, A:H.125, A:H.125, A:T.128 Salt bridges: A:H.125 GE7.4: 11 residues within 4Å: Chain A: Q.49, A.52, L.56, T.79, A.82, A.83, W.86 Chain B: A.123, E.124, H.125, T.128 14 PLIP interactions: 8 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:Q.49, A:A.52, A:L.56, A:L.56, A:T.79, A:A.82, A:A.83, A:W.86, B:T.128 Hydrogen bonds: B:E.124, B:H.125, B:T.128, B:T.128 Salt bridges: B:H.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Naidu, B.N. et al., Design, Synthesis, and Preclinical Profiling of GSK3739936 (BMS-986180), an Allosteric Inhibitor of HIV-1 Integrase with Broad-Spectrum Activity toward 124/125 Polymorphs. J.Med.Chem. (2022)

Release Date

2022-04-06

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Integrase

Related Entries With Identical Sequence