SMTL ID : 7t9q.1

Crystal structure of Crocodile defensin CpoBD13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 4 residues within 4Å: Chain A: S.1, N.30, G.31 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.1, A:S.1, A:N.30, A:G.31

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: S.4, Q.7, C.8, N.11, I.26, G.27, N.28, C.29, C.36 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.4, A:I.26 EDO.3: 3 residues within 4Å: Chain A: S.1, Y.3 Ligands: FLC.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, S.A. et al., Crocodile defensin (CpoBD13) antifungal activity via pH-dependent phospholipid targeting and membrane disruption. Nat Commun (2023)

Release Date

2023-01-18

Peptides

CpoBD13: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CpoBD13

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