SMTL ID : 7ta9.1

Crystal Structure of thymidylate synthase from Acinetobacter baumannii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: K.26, G.27, D.28 Chain B: N.148 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.27 EDO.2: 2 residues within 4Å: Chain A: N.76, K.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.76 Water bridges: A:D.74, A:K.78 EDO.3: 6 residues within 4Å: Chain A: Y.111, L.167, P.168, P.169, C.170, H.171 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.168, A:C.170 Water bridges: A:N.201

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 5 residues within 4Å: Chain A: R.116, N.117, Q.130, G.132, D.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.130, A:G.132

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 5 residues within 4Å: Chain A: P.168, R.190 Chain B: S.149, R.150, R.151 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.150, B:R.151, A:R.190, A:R.190 Water bridges: B:N.146, B:N.146, B:N.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bolejack, M.J. et al., Crystal Structure of thymidylate synthase from Acinetobacter baumannii. to be published

Release Date

2022-01-26

Peptides

Thymidylate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidylate synthase