SMTL ID : 7tc2.1 (3 other biounits)

Human APE1 in complex with 5-nitroindole-2-carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x GID: 5-nitro-1H-indole-2-carboxylic acid(Non-covalent)

GID.1: 12 residues within 4Å: Chain A: T.29, L.30, D.58, I.59, S.103, R.104, Q.105, F.130, D.131, S.132, F.133, L.286 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.30, A:F.130 Hydrogen bonds: A:S.132, A:F.133

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: N.142, N.180, A.198, G.199, L.250 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pidugu, L.S. et al., Characterizing inhibitors of human AP endonuclease 1. Plos One (2023)

Release Date

2022-12-21

Peptides

DNA-(apurinic or apyrimidinic site) endonuclease, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-(apurinic or apyrimidinic site) endonuclease, mitochondrial

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